{"ID":2893096,"CreatedAt":"2026-06-01T04:54:23.091178241Z","UpdatedAt":"2026-06-01T04:54:23.091178241Z","DeletedAt":null,"paper_url":"https://arxiv.org/abs/2507.13901","arxiv_id":"2507.13901","title":"Software architecture and manual for novel versatile CT image analysis toolbox -- AnatomyArchive","abstract":"We have developed a novel CT image analysis package named AnatomyArchive, built on top of the recent full body segmentation model TotalSegmentator. It provides automatic target volume selection and deselection capabilities according to user-configured anatomies for volumetric upper- and lower-bounds. It has a knowledge graph-based and time efficient tool for anatomy segmentation mask management and medical image database maintenance. AnatomyArchive enables automatic body volume cropping, as well as automatic arm-detection and exclusion, for more precise body composition analysis in both 2D and 3D formats. It provides robust voxel-based radiomic feature extraction, feature visualization, and an integrated toolchain for statistical tests and analysis. A python-based GPU-accelerated nearly photo-realistic segmentation-integrated composite cinematic rendering is also included. We present here its software architecture design, illustrate its workflow and working principle of algorithms as well provide a few examples on how the software can be used to assist development of modern machine learning models. Open-source codes will be released at https://github.com/lxu-medai/AnatomyArchive for only research and educational purposes.","short_abstract":"We have developed a novel CT image analysis package named AnatomyArchive, built on top of the recent full body segmentation model TotalSegmentator. It provides automatic target volume selection and deselection capabilities according to user-configured anatomies for volumetric upper- and lower-bounds. It has a knowledge...","url_abs":"https://arxiv.org/abs/2507.13901","url_pdf":"https://arxiv.org/pdf/2507.13901v1","authors":"[\"Lei Xu\",\"Torkel B Brismar\"]","published":"2025-07-18T13:28:32Z","proceeding":"eess.IV","tasks":"[\"eess.IV\",\"cs.CV\"]","methods":"[]","has_code":false,"code_links":[{"ID":612034,"CreatedAt":"2026-06-01T04:54:23.091178241Z","UpdatedAt":"2026-06-01T04:54:23.091178241Z","DeletedAt":null,"paper_id":2893096,"paper_url":"https://arxiv.org/abs/2507.13901","paper_title":"Software architecture and manual for novel versatile CT image analysis toolbox -- AnatomyArchive","repo_url":"https://github.com/lxu-medai/AnatomyArchive","is_official":false,"mentioned_in_paper":false,"mentioned_in_github":true,"github_stars":0}]}