{"ID":2877863,"CreatedAt":"2026-06-01T04:54:23.091178241Z","UpdatedAt":"2026-06-01T04:54:23.091178241Z","DeletedAt":null,"paper_url":"https://arxiv.org/abs/2508.18613","arxiv_id":"2508.18613","title":"ModAn-MulSupCon: Modality-and Anatomy-Aware Multi-Label Supervised Contrastive Pretraining for Medical Imaging","abstract":"Background and objective: Expert annotations limit large-scale supervised pretraining in medical imaging, while ubiquitous metadata (modality, anatomical region) remain underused. We introduce ModAn-MulSupCon, a modality- and anatomy-aware multi-label supervised contrastive pretraining method that leverages such metadata to learn transferable representations. Method: Each image's modality and anatomy are encoded as a multi-hot vector. A ResNet-18 encoder is pretrained on a mini subset of RadImageNet (miniRIN, 16,222 images) with a Jaccard-weighted multi-label supervised contrastive loss, and then evaluated by fine-tuning and linear probing on three binary classification tasks--ACL tear (knee MRI), lesion malignancy (breast ultrasound), and nodule malignancy (thyroid ultrasound). Result: With fine-tuning, ModAn-MulSupCon achieved the best AUC on MRNet-ACL (0.964) and Thyroid (0.763), surpassing all baselines ($p\u003c0.05$), and ranked second on Breast (0.926) behind SimCLR (0.940; not significant). With the encoder frozen, SimCLR/ImageNet were superior, indicating that ModAn-MulSupCon representations benefit most from task adaptation rather than linear separability. Conclusion: Encoding readily available modality/anatomy metadata as multi-label targets provides a practical, scalable pretraining signal that improves downstream accuracy when fine-tuning is feasible. ModAn-MulSupCon is a strong initialization for label-scarce clinical settings, whereas SimCLR/ImageNet remain preferable for frozen-encoder deployments.","short_abstract":"Background and objective: Expert annotations limit large-scale supervised pretraining in medical imaging, while ubiquitous metadata (modality, anatomical region) remain underused. We introduce ModAn-MulSupCon, a modality- and anatomy-aware multi-label supervised contrastive pretraining method that leverages such metada...","url_abs":"https://arxiv.org/abs/2508.18613","url_pdf":"https://arxiv.org/pdf/2508.18613v1","authors":"[\"Eichi Takaya\",\"Ryusei Inamori\"]","published":"2025-08-26T02:27:00Z","proceeding":"eess.IV","tasks":"[\"eess.IV\",\"cs.LG\"]","methods":"[]","has_code":false}